Lessons from 5 Years of Routine Whole-Genome Sequencing for Epidemiologic Surveillance of Shiga Toxin-Producing Escherichia coli, France, 2018-2022
Whole-genome sequencing (WGS) is routine for surveillance of Shiga toxin-producing Escherichia coli human isolates in France. Protocols use EnteroBase hierarchical clustering at
Author(s): Jones Gabrielle, Nodari Carolina Silva, Fabre Laëtitia, de Valk Henriette, Noel Harold, Cointe Aurélie, Bonacorsi Stéphane, Weill François-Xavier, Le Strat Yann
Publishing year: 2025
Pages: 117-128
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