COVID-19 Epidemiological Update, June 10, 2021: A marked decline in SARS-CoV-2 transmission across the country; vigilance must be maintained
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Published weekly, the epidemiological update on COVID-19 surveillance provides a detailed analysis of the indicators established by Santé publique France and its network of partners to track the progression of the epidemic and inform public policy decisions.
In week 22 (May 31–June 6, 2021), the circulation of SARS-CoV-2 across the country declined sharply, and the strain on hospitals eased. After several months of excess mortality, the number of deaths from all causes has returned to expected levels. Recently made available to all individuals aged 18 and older, vaccination among young adults is progressing rapidly (more than 27% of 18- to 24-year-olds had received their first dose as of June 8, 2021). However, vaccination coverage, although high among the elderly, is struggling to increase, requiring targeted actions to encourage and facilitate vaccination among seniors who have not yet been vaccinated. Against the backdrop of easing health restrictions and the circulation of variants of concern, self-isolation upon the onset of symptoms or in the event of contact with a confirmed case, contact tracing, full vaccination, and other individual preventive measures must continue to be strongly promoted and enforced to sustain the current favorable trend over the long term.
Significant decrease in incidence rates across all age groups
Nationwide, 45,547 new cases were confirmed in week 22, averaging approximately 6,500 cases per day. The incidence rate was sharply lower compared to that of week 21 (adjusted for the effect of the Monday, May 24 holiday) at 68 per 100,000 inhabitants (-38%), with this decrease observed across all age groups. The testing rate decreased (2,988 per 100,000 inhabitants, a 15% decrease compared to the adjusted rate for Week 21). The positivity rate continued to decline to 2.3%, a decrease of 0.8 percentage points compared to Week 21.
The decline continues in hospitals
The decline in the number of new hospitalizations of COVID-19 patients and new admissions to critical care units, observed since Week 15, continued in Week 22 (-12% and -22% compared to Week 21, respectively), even though numbers remained high. The number of hospitalized COVID-19 patients continued to decline as of June 8, 2021 (14,043, including 2,407 in critical care units).
Furthermore, the number of deaths from all causes and across all age groups was within the usual range of fluctuation in weeks 20 and 21 after nearly eight months of excess mortality nationwide. Deaths among hospitalized COVID-19 patients continued to decline in week 22 (-23%) and remained at a very low level in social and medico-social institutions (ESMS).
The Alpha variant remains predominant; the Delta variant calls for the utmost vigilance
The proportion of suspected cases of the variant of concern 20I/501Y.V1 (Alpha, which emerged in the United Kingdom) remains predominant, accounting for 74.6%, according to an analysis of screening results in week 22. The proportion of suspected cases of the 20H/501Y.V2 variant (Beta, which emerged in South Africa) or the 20J/501Y.V3 variant (Gamma, which emerged in Brazil) was 6.3% nationally, with regional variations.
Available genomic surveillance data confirm this predominance of the variant of concern Alpha (20I/501Y.V1). In the Flash #10 survey (May 25, 2021), a slight decrease was observed in the proportion of variants carrying the E484K or E484Q mutations to 10.8% (13.0% in the Flash #9 survey vs. 11% in Flash #8 and 8.7% in Flash #7). Despite a recent increase in the detection of the VOC 21A/478K variant (B.1.617.2, Delta, which emerged in India) in sequenced samples, there is currently no evidence of significant circulation of this lineage within the country.
However, the emergence of clusters with local transmission of this variant indicates that such transmission has begun in France, which calls for the utmost vigilance, given its link to potential vaccine escape and data suggesting increased transmissibility compared to the reference variants and the 20I/501Y.V1 (Alpha) variant.
Screening is shifting toward the detection of variants of interest
The overall strategy for variant surveillance is based on three pillars: epidemiological surveillance, screening of positive tests, and genomic surveillance via sequencing, which allows for a complementary approach to both map the circulation of known variants and detect new emerging variants.
As the epidemic evolves and new variant strains proliferate, screening-based surveillance is being refined to enable responsive monitoring of the detection of certain mutations of interest. The acquisition of mutations within the SARS-CoV-2 virus genome is an expected phenomenon, and some of them (E484K, E484Q, and L452R) appear to have an impact on immune escape or the virus’s transmissibility, hence the need to monitor them particularly closely.
The improvement of this strategy relies on the use of new screening kits by laboratories and is accompanied by changes to the data reported to the SI-DEP database, with the adoption of specific nomenclature for each of the three mutations of interest.
Starting June 10, the gradual reduction in screening tests for the Alpha (20I/501Y.V1), Beta (20H/501Y.V2), and Gamma (20J/501Y.V3) variants implies the cessation of open data sharing for the related indicators.
For any changes to information systems and the data reporting chain, a period is needed to assess the actual ramp-up, the quality of the data received, and its consistency with available data. These new indicators, which will be broken down by region, will be shared as open data as soon as their consolidation allows. During this transitional period, and effective June 17, 2021, results will be published regularly on the Santé Publique France website as well as in the weekly epidemiological reports.
For more information
Circulation of variants: new screening strategy based on the detection of mutations of interest
Coronavirus: circulation of SARS-CoV-2 variants
Significant increase in vaccination rates among young adults
As of June 8, 2021:
28,699,432 people had received at least one dose of the vaccine, representing 42.8% of the population
14,358,578 had completed their vaccination series, representing 21.4% of the population.
Recently made available to everyone aged 18 and older, vaccination among young adults has increased significantly in recent weeks: more than 27% of 18- to 24-year-olds had received their first dose as of June 8, 2021. However, while vaccination coverage is high among older adults, it has struggled to increase in recent weeks, highlighting the need to encourage and facilitate access to vaccination for older adults who have not yet been vaccinated through targeted and specific initiatives.
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10 June 2021
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